Bioconductor Normalized counts

Showing : normalized counts • reset

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1.7k

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scran scater normalized counts

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by Radek ▴ 90

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1.6k

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deseq2 normalized counts

updated 7.2 years ago by Steve Lianoglou ★ 13k • written 7.2 years ago by anaQ • 0

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1.9k

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normalized counts log2

7.4 years ago agdif ▴ 10

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8.7k

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rnaseq deseq2 normalized counts

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by JoannaF ▴ 10

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6.6k

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deseq2 normalization normalized counts

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by naets_matthias • 0

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2.3k

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edger batch effect normalized counts

updated 8.1 years ago by Ryan C. Thompson ★ 7.9k • written 8.1 years ago by Yahan • 0

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1.8k

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deseq2 cqn normalization normalized counts

updated 8.3 years ago by Michael Love 43k • written 8.3 years ago by mark.ebbert • 0

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1.4k

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normalized counts grch37 grch38 r bioconductor

8.3 years ago salvocomplicazioni1 • 0

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2.2k

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cn.mops log normalized counts table

updated 8.6 years ago by Günter Klambauer ▴ 540 • written 8.6 years ago by falk.zakrzewski • 0

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1.9k

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deseq2 counts normalized counts

updated 9.5 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by snamjoshi87 ▴ 40

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2.6k

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shrna edger deseq2 differential expression normalized counts

9.5 years ago Jane Merlevede ▴ 90

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3.8k

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diffbind normalized counts

9.6 years ago GFM ▴ 20

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Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0

By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…

Answer: Bulk RNAseq analysis for by James W. MacDonald 68k

In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…

Comment: Jobs at Ensembl by frostybuddyy • 0

I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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Popular Question to Guido Hooiveld ★ 4.1k